intragenic_variant [SO_0002011]

A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping sequence.

intragenic_variant

ID: SO_0002011

Class

A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping sequence.

Requested by Pablo Cingolani, for use in SnpEff.

Open in VFB 3D Browser →

Classification

transcript_variant

Alternative Names

Synonym	Scope	Reference
intragenic variant	exact synonym
Jannovar:intragenic_variant	exact synonym	//doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html
snpEff:INTRAGENIC	exact synonym	VAR

References

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e="display:flex;"> "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "snpEff:INTRAGENIC", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [ { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } ] }

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